Bioinformatics 2
Notes
Where possible I shall post lecture notes the evening after the lecture. Additional reading will be posted before or after the lecture as appropriate.
2008 notes are available for reference
Lecture Notes
Lecture 1 (14 Jan 2009) Introduction to Bioinformatics 2
Douglas Armstrong
Slides (
[2 per page]
[6 per page])
Lecture 2 (21 Jan 2009) Proteomics
Guest lecture from Juri Rappsilber
[Notes]
Lecture 3 (28 Jan 2009) Making sense of proteomics
Douglas Armstrong
Slides (
[2 per page]
[6 per page])
Reading material:
Rual et al 2005
Han et al 2004
Pocklington et al 2006
Lecture 4 (04 Feb 2009) Microarray Technologies
Guest lecture from Donald Dunbar
Slides (
[2 per page]
[6 per page])
Tutorial/Lab session (11 Feb 2009) Network visualisation and analysis
Douglas Armstrong & Lysimachos Zografos
Tutorial material
Arrangements: We suggest you mix up and work in pairs on this to get the most benefit from it (this is essential if you do not have an informatics account). Douglas will come to the normal lecture room at 1110 and leave at 1115 to take those without slipe cards over to Appleton Tower. All others should meet at AT5.08 (Computing Lab South).
Lecture 5 (18 Feb 2009) Sequence analysis and sequence databases
Douglas Armstrong
Slides (
[2 per page]
[6 per page])
Alignment practical
Lecture 6 (25 Feb 2009) Bioinformatics in Drug Discovery Industry
Guest Lecture from Dr Chris Larminie (GSK)
Slide (
(
[2 per page]
[6 per page])
Video on how genes are knocked out in mice
Lecture 7 (4 Mar 2009) Heuristic methods, clustering, gene feature finding
Guest Lecture from Dr Ian Simpson
[SLIDES] and
[CLUSTERING NOTES] from
Dirk Husmeier
Tutorial/Lab session (11 Mar 2009) Sequences and Databases
Douglas Armstrong & Lysimachos Zografos
Lecture 8 (18 Mar 2009) Final session to be confirmed
